ProteinAtlas - cell line: Karpas-707

44 cell lines and 32 tissues. For cell lines, early-split samples were used as duplicates and total RNA was extracted using the RNeasy mini kit. All tissues were from the Uppsala Biobank and RNA samples were extracted from frozen tissue sections. For a total of 91 cell line samples and 122 tissue samples, mRNA sequencing was performed on Illumina HiSeq2000 and 2500 machines using the standard Illumina RNA-Seq protocol with a read length of 2x100 bases. Transcript abundance was estimated using Tophat v2.0.8b and Cufflinks v2.1.1. For each gene, the average FPKM value for replicate samples were used as abundance scores. The threshold to detect gene was > 1 FPKM.

Tissue Condition Samples
Test cell culture
Control cell culture
Gene Fold Change (log2) Significance Genus Species